I just looked at both of these exbeeriments, and perhaps find them flawed because of the following....
Bucket vs PET Carboy
The author states that he was able to very cleanly rack the beer from the carboy, yet when draining the bucket through the spigot, a fair amount of yeast cake was transferred to the keg, hence different beers perhaps?
Glass vs PET Carboy
Quote from exbeeriment, "I returned 28 hours later to find the beer in the glass carboy actively fermenting, while the beer in the PET carboy looked dead."
The glass fermenter experienced the onset of fermentation a full 28 hours sooner than the PET, then both were warmed on the same schedule? Perhaps the ferm chamber chilled the PET carboy more due to less mass and fermentation was much slower to start? Regardless, these were 2 different fermentations! How does one explain the lengthy lag time w/ the PET fermenter? Two different fermentations, will yield 2 different beers!
I just don't think the differences presented can be directly attributed to the fermenter...
Maybe Marshall should try 2 identical batches and see if there is statistical significance that they are different??? lol. How clean are the serving kegs, lines, taps and growlers used in the exbeeriment?