Maintaining A Healthy Yeast Bank Long Term

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One of the most important things you can do to brew great beer is ensure you have a healthy, unstressed yeast population. From pitching rates, fermentation temperature, avoiding contamination by competitive organisms, all the way through bottle conditioning; an unhappy yeast culture will kill a batch faster than you can drop a 5 gallon glass carboy on a concrete patio.
As long as your clean, you can do prepare your yeast for storage outside of a lab.
The best way to ensure you have the happiest yeast possible is to completely control the cold-chain of your yeast supply. By that I mean yeast ranching, and doing it the right way to ensure you have a real, pitchable amount on brew day. Add in the ability to archive rare strains, as well as save you a few bucks per batch, and you’re now wondering “why haven’t I done this sooner?” You don’t have to own a certified lab to do this either (ie, my “laboratory”, an unfinished plywood tabletop in a storage room). All you need is a little patience and a penchant for cleanliness and detail.
Table 1: Overview comparing 3 different yeast banking techniques
The table outlines some of the various advantages and disadvantages of each type of storage outlined in this article. Generally, there are 2 ways to keep a yeast bank: at 4°C or at -20°C. Refrigerator temperatures are good for short term storage, but true banking will require a freezer stock to essentially halt biological activity. Since yeast cell walls will rupture due to the formation of ice crystals at freezer temperatures, you’ll need to add a cryo-protectant to reduce the crystal formation. We’ll go into that later. First, the easy way.

Storing Under Beer


Keeping yeast under beer is effective if you have a fast turnaround
Let’s say you brew a beer using a sachet or liquid pack of yeast from the homebrew store. At the end of primary fermentation, you’re left with a boat load of cells (usually around 2 trillion in a 5 gallon batch) in a cake after racking. Using this trub is the easiest way to keep a fresh stock of a favorite yeast strain. Fresh is the key word here. Yeast will continue to metabolize and be otherwise fairly biologically active in any environment above -20°C, so the term “fresh” is time dependent. A good rule of thumb is to store yeast in the fridge under beer no longer than 2 months before taking a portion of it and making a new starter to restart the clock.
Method
Take the cake, swirl it around in the bucket or carboy in the little beer left at the bottom to re-suspend, and pour into mason jars sanitized with your favorite solution. Keep the caps loosened for a few days and store them in the refrigerator. If used within a couple of weeks, 50ml of this compacted slurry at the bottom of the jar is good enough to inoculate a new 5 gallon batch. Viability will be reduced, and sluggishness will increase with time, so take that into consideration or use one of many online calculators (MrMalty, BrewersFriend, etc) to estimate the volume to use.
Notes
This is a very quick and dirty method for maintaining a yeast bank. While being quite easy and well suited for brewing many beers back-to-back with the same strain, it will quickly become difficult to maintain many strains or keep mutations to a minimum. That being said, there are also some requirements to keep yeast cultures this way. The batch used to create the initial cake must be very low impact to the yeast. It should be low gravity, reasonably low temperature (no hot and fast ferments), must be free from bacterial and wild yeast contamination, and it must not be a blend of strains that are used in many commercially available cultures. Also, it seems as if there has been a shift in the opinion in “water washing” the yeast prior to storage in a jar. Though logic suggests that a yeast population absent of hop debris and coagulated proteins would be beneficial for storage, the general thinking these days is that more collection steps would only increase the possibility of infection. I agree with this argument, and I suggest just dumping the whole lot into a sanitized jar for collection. K.I.S.S., always a good mantra in brewing.

Agar Plates and Slants


Keeping yeast in slants is more viable, but will require you to build up a healthy starter.
A better way, though fairly more involved, of keep a yeast bank is through agar gel slants and plates. This is the method of choice for microbiologists for keeping viable strains actively growing, so why not for us homebrewers? Once you have this method down, it opens up a whole new powerful set of possibilities. Some examples include culturing wild yeast from your backyard or garden, removing bacterial contamination from a rare strain, and selecting a high growth or high alcohol tolerant strain.
Method
There are as many ways out there to accomplish agar slanting as there are styles of brew, so I will very roughly walk through the general procedure. Google “agar slants” and a multitude of great articles will come up outlining the details. There is a general list of equipment needed for agar slanting: agar powder, pressure cooker, petri dishes or small vials, stainless wire or inoculating loop, and mason jars. Ok, so not a long list, and certainly doable without a large budget. The general steps are fairly straightforward:
  1. Prepare a 2% (2g in 100ml wort) agar solution and pressure cook for 10 minutes in a jar
  2. Allow the agar to cool to around 70°C, and pour 10ml into each 100mm petri dish, or fill the vial halfway, and keep at a slant (“agar slants”, get it?) while the agar gels.
  3. Allow the dishes and vials to cool.
  4. Take the sterilized stainless wire or inoculating loop and dip a sample into the smackpack or yeast vial and spread on the surface of the agar gel
  5. Cover and allow the yeast to grow into a nice thick layer on the gel at room temperature
  6. Seal the plates or screw the lid of the vials and keep at 4°C
Since the culture has not been through a true growth phase in the stress of making a normal beer, you can keep reculturing these plates without too much worry about mutations, as opposed to keeping jars of slurry noted above. The plates can be kept in the fridge for 6 months to a year before having to replate, and replating is as easy as taking the inoculating loop and smearing a sample from the old plate into a new one and repeating the growth/storage process. To grow a starter from the plate, take the sterilized loop and scoop a sample from the slant, twist it around in 2-5 ml of wort. Grow the wort for a couple of days, and incrementally build that volume into your target starter volume, not exceeding a 1:10 dilution (for example, take the 5ml starter, dump it into a 50ml starter and grow, and dump that into a 500ml starter, etc).
Notes
Without describing every single detail along the way, use common sense in preparing the cultures. If you're using glass petri dishes and vials, sterilize them in the pressure cooker. If using plastic, make sure you buy pre-sterilized packs, keep them sealed, and don’t reuse them. Beyond just keeping a master stock of yeast, this method can be used to clean up a contaminated culture by smearing a sample of the batch, and picking and growing individual colonies of yeast from a single cell. The yeast are white, foamy looking, while bacteria are usually shiny. Mold is obvious, and the whole plate should be thrown out if seen, as the hyphae underneath the gel will no doubt pop up somewhere else.

Frozen Stocks


I am a microbiologist by education and trade, and in my opinion, keeping frozen stocks of yeast cultures is the way to go for a homebrewer (and also quite simple to do). While you don’t get that warm, fuzzy feeling of watching a single cell grow into a colony and knowing exactly how pure your culture is, with careful aseptic technique you can keep dozens of strains ready to go for pitching in a couple of days, and it doesn’t take a lot of maintenance or equipment (or valuable refrigerated space). The addition of a cryopreservative (food grade glycerin) is required as mentioned above to keep ice crystals from rupturing the cells, but everything else is pretty much the same as keeping slurry jars. An added benefit of storing cells at such a low temperature is that biological activity slows way down, essentially halting the chance of spontaneous mutations that may occur from fridge temperatures.
You can store a lot of yeast for a lot of time if you're able to freeze your cultures effectively.
Method
My method for keeping frozen stocks of yeast is focused on creating single-pitch tubes to make fresh starters for 5 gallon batches. You can also make much smaller tubes to steal a small quantity without thawing the stock and step the culture up for a starter. That takes more time, and time is valuable, so I don’t do it, but it is perfectly viable. The equipment needed for frozen banking is simple: pressure cooker, mason jars, sterile tubes, and glycerin (drug store).
  1. Make a 25% v/v stock solution of glycerin in water (30ml glycerin, 70ml water) and pressure cook for 10 minutes.
  2. Make a 1000ml starter from a fresh yeast culture and allow to settle or cold crash in the fridge
  3. Decant the beer off the top and swirl the yeast up
  4. Divide the yeast into 10 vials
  5. Double the volume of each vial using the cooled 25% glycerin solution (for example, after decanting you are left with 50ml of yeast slurry. Add 5 ml slurry to each vial and add 5ml 25% glycerin to each vial. This will give you a final concentration of 12.5% glycerin).
  6. Mix the tubes well and place in a container filled with isopropyl alcohol to the liquid level in the tubes to reduce the freezing rate in the freezer (this can be skipped, but cell viability will be reduced if placed directly into the freezer. Cells prefer to freeze at a rate of 1°C per minute).
  7. After 24 hours the frozen tubes can be removed from the alcohol and stored for several years.
  8. To inoculate a 1000ml starter for a brew, quickly unfreeze the tube to the starter wort temperature and dump it in. That will create a 1:10 dilution from the earlier split. Using a stir plate will have the starter ready and settled usually within 48 hours.
  9. Once you are down to one tube in the freezer, make a starter as in Step 8 using the tube, and freeze into more tubes as in Step 3. So you theoretically from one smack pack and some DME have made enough cells for almost 30 batches in just 3 controlled generations of culture (or over 700 batches if you expanded each tube out 3 generations).
Notes
If you increase the final concentration of glycerin in the frozen culture to around 50%, viability will be reduced, but the cells will not freeze solid, and you can dip a sterilized loop in there to inoculate a small starter, very much like inoculating from a slant. This way you can cut down the storage volume of your stocks to a few 1.5ml tubes instead of larger vials. But keep in mind it takes a week or more to grow a starter from that instead of a couple of days.
Regarding the storage time, it is also assumed that a chest freezer or manual defrost freezer is used. If a fridge/freezer is used that has an automatic defrost cycle, the tubes should be placed in a styrofoam box with ice packs inside to maintain temperature while the defrost cycle works.
Keep Records
Whichever method you choose to maintain your yeast bank, keeping detailed records is mandatory. Typical details are yeast ID, strain, source, date commercially manufactured, storage date, number of generations from packaging, parameters of beer obtained from (if slurry), date to re-plate or refreeze, among others. These records will be the living document that tells you how viable the stocks may be, when routine culturing is necessary, and depending on how detailed you get, how changes in your protocol can increase cell viability. These are all good things, and just as necessary as keeping a brewing log book to note how a beer turned out. If you’re a yeast freak like myself and eventually build up a stock of over 40 different strains, you’ll definitely need a spreadsheet with tasting notes, fermentation parameters, and ideal beer styles in order to plan your next brew.

A Final Note


Yeast are incredibly resilient little buggers. Just a few years ago a professor at California Polytechnic State brewed beer with a yeast strain found to be 45 million years old that was stuck in a chunk of amber, inside the digestive tract of a bee. That’s one tough cookie of a cell that’s been through a lot over the millennia. In contrast, the methods given above are aimed at reducing exactly this kind of stress, but are by no means set in stone or an all-inclusive list. Variations in almost every step will likely give great results. Keep in mind the few critical rules: reduce contamination, reduce stress and mutations, and control the growth cycle. No special tools are required to keep a healthy yeast bank long-term; use some common sense, the guidelines above, and you’ll have a yeast population ready for any brew you can throw at them.
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Nope, they're single use as far as I'm concerned. Cheap enough. But you could reuse them using a caustic, acid, starsan treatment. If you put a different yeast strain in there, the extra effort would help against contamination. They can't be autoclaved.
 
Yeah, as long as the final glycerin concentration is around 12.5% it would work just fine to freeze as normal. However, you would also be storing any bacteria or wild yeast present in the slurry from brewing, so it may defeat the purpose of a frozen pure stock.
 
You can see bacteria through a scope, though you would usually need a good 40x objective. The cheapest way to test for viable bacteria is to do serial dilutions of the sample, and plate a low volume out on agar. Grow the plate for a few days and count bacteria/yeast colonies. There's no cheap kit that I know of that will tell you any better.
 
The tubes come with a holder typically, and none can be autoclaved that I've seen. You could get glass vials and autoclave those and reuse them.
Yeah, going up to 2L for a 10 gal batch makes good sense. As long as you're getting enough cell density.
 
As far as slurry volume, it should be noted that I have seen some strains take up almost twice the volume of another strain with the same compacted total number of cells, PacMan is a good example, they're pretty plump cells.
You can clean the tubes, and sanitize by chemical, but they're not autoclavable.
 
Yeah, that's what I do, just open it up for as little time as possible and seal when you're done.
 
Thanks for the responses.
Want to make sure I understand this.
Do you think the 30 tubes of yeast are going to be alright or too weak? I guess a starter will be the test. Do you usually just fill the ten tubes & dump the rest?
Thanks again
 
Great article. Definitely helps me get my head wrapped around storing yeast properly. Gave the courage to take the the step deeper into frozen stocks.
 
I've just put first lot of yeast in the freezer. if the yeast was stored at -17 rather than - 20 C how much do you think this would reduce storage time. does freezing have a significant effect on viability. if you frozen 20 billion cells how many would you expect to survive defrosting after 6 months in the freezer? thanks
 
Is a 99.5% pure USP glycerine acceptable for this process?
 
Thank you for the post.
I have several questions about the Frozen Stocks method:
1) You say to make a 25% solution of glycerin in water (30ml glycerin, 70ml water). But wouldn't that be a 30% solution?
2) Regarding the use of isopropyl alcohol, can I simply put the vials in the fridge first and then to the refrigerator to make the freezing process less abrupt?
3) Also, you say that this vial can be pitched into a 1000ml starter making a 1:10 dilution. But, wouldn't it be a 1:20 since the amount of actual yeast in the vial is 5ml and the rest is glycerine solution?
Cheers!
 
Had a thought, I have used the frozen technique with glycerin a few times and each is a success. The long part for me is pressure cooking the glycerin/water.
Can you fill up 40-50 vials with just glycerin/water and freeze and then thaw out when your ready to do another batch of yeast and add the yeast directly to the vial with room temperature glycerin in it?
Thanks.
Jeff
 
I tried this last night, but the glycerin solution separated from the yeast in the freezer, and so I'm not sure how much good it did.
 
[…] do you go about freezing yeast? I essentially copy the methods laid out here. Effectively you make a starter to bump up the yeast population/make sure it is viable to start out […]
 
Very helpful article! If I started with fresh washed slurry from a recent batch (instead of the manufacturer-packaged yeast) would the recommendations change any? I am not brewing for several months and would like to save several vials of each yeast I used in a recent cycle of brewing.
 
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I just did this but used vaccum sealer bags instead of vials. The frozen yeast is still kinda frozen. Kinda like a slushy.

Is this normal? Should it stay a liquid?
 
I've been doing this with borosilicate vials from amazon, been working great! $15 for 40 vials just need to not break them and you can reuse them :)
 
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