I don't think he said anything about esters or phenols, just proteins. Though I'm sure that bacteria could be coaxed into producing the flavor compounds associated w/ yeast. Yeast produce all kinds of craziness, proteins, esters, ketones, aldehydes...you name it. It'd be a hell of a lot of work just to figure out exactly what all those trace compounds are, let alone trying to get bacteria to produce those.
It's funny, I was actually just thinking about something like this (like, literally a couple minutes before I saw this thread), stemming from something I read that seems to indicate that brettanomyces isn't capable of producing much in the way of fusel alcohols (I've actually heard that before from a couple of different places), and I was kind of wondering if it would be possible to engineer some kind of "super yeast" that would only produce favorable flavor compounds, even under stress. But I think it would be way more work than it's worth to try to engineer something like that, when you can get really good, really clean yeast already. Or just propagate yeast generation after generation until you get something really good.
Yeah, it's interesting to think about, but realistically it probably would be more trouble than it's worth.