For example, perhaps the purpose of yeast is to help facilitate some kind equilibrium for a broader ecosystem.
You can't separate the ecosystem from its contents. The universe is not a static place. It sometimes appears that way, but that's because our lifetimes (and all of humanity) sample such a miniscule fraction of history. The current state of earth and its ecosystems has only been in place for the briefest flash, and for all we know it's a very temporary state of affairs.
Yeast, like any organism, is a
part of an ecosystem. Members of it live and die because they happen to interact in particular ways. We're a part of this as well, so it's a perfectly valid observation that human eating and drinking habits are a bit part of the reason that yeast are doing so well.
It is sort of strange when you realize how tightly interwoven we are with other organisms in the environment. But it's not a coincidence or miracle that yeasts and molds happen to produce compounds that we can consume. Part of the reason that our human biology uses those compounds to produce energy is that they were available in the environment. We produce waste of our own, and organisms that can make a living decomposing that crop up. The links continue and eventually you get back to where you started and *poof*, you have a food chain. But it's not stable---entropy is increasing, energy stores in the system are being depleted, and eventually a piece dies out and it's no longer circular. Things fall apart for a while until a new cycle is found, probably with many pieces similar to the previous equilibrium, but never quite the same....
Nature seems to like equilibria simply because they're, by definition, stable.