I agree with using a 4-prong. It is not ideal to use 3-prong.
To safely use a 3-prong plug, don't use the neutral for anything except to ground the metal kettle. Also, ensure that there is no other devices on this circuit. In this way, the neutral should be exactly the same as a normal "green" earth ground.
Where you get into a little trouble here is if you use half the 240VAC to derive 120VAC. You might consider doing this to run a pump. In this case, the 120 would come from one of the hot wires and neutral. Since the neutral would be carrying current, and accepting that all wire has some resistance, you now will measure a voltage on the neutral due to the current and resistance; you'll measure a voltage on the kettle. Might be small, but you don't want that. This happens because the neutral wire that is meant to be the safety earth ground is being used to carry current.
I highly recommend using a licensed electrician to look over what you have done. In fact, have one put a GFCI into your beaker box and look at your job at the same time.