I think I have figured something out here that potentially is an issue. I'm going to try again and link the whole recipe. I have it selected to be a public recipe and I'm using the share as URL, so I hope non-BF folks can see this. If not, I'm piecing together some screen shots in here.
https://www.brewersfriend.com/homebrew/recipe/view/843769/lematre-s-cosmic-tripel

Recipe

Water Volumes
To be very clear here... 90 minute boil, with 0.5 gal combined loss to kettle dead space and chiller, so my post-boil volume is 3.0 gal and is not directly shown on the water volumes. The final 2.5 gal is in my fermenter after kettle dead space, hop absorption and chiller losses.
See the next two pictures, one of the detailed grist bill and a crude spreadsheet I made. I figured each individual ppg for each grain. Pay attention to the yellow boxes on the spreadsheet. These are the points added at 2.5 gal volume and with my brewhouse 75% efficiency applied.

Detailed Grist

Spreadsheet
To the points:
- All grains INCLUDING the late sugar addition were calculated at 2.5 gal, which is my volume in the fermenter! I boiled down to 3 gal, and had .5 gal losses.
- The late sugar addition DID NOT have the 75% efficiency applied.
So my questions/conclusions are:
- Why is the software calculating a boil down to my fermenter volume? Even with my batch size set to 2.5 gal and "Fermenter", wouldn't the OG calculation be based on the points at 3 gal (my flameout volume) with the brewhouse efficiency applied?
- Why is the late sugar addition the only thing NOT having the 75% brewhouse efficiency applied? Is it because it 100% fermentable? But then Carapils, Aromatic, Pilsner and Rye all have differing fermentability, but are being applied the same.
- There is a selection in the advanced recipe stats section that I recently saw and have been researching to understand exactly what it means. It is labeled "Use Boil Size and Boil Evaporation Rate". Selecting this box changes the OG significantly in my recipes. Having now put together this spreadsheet and comparing those numbers, it appears this selection uses my flameout volume to calculate the OG!!! This makes sense to me. Question 1, does not, unless perhaps you have ZERO losses from kettle to fermenter.
- According to my spreadsheet, taking all the 3 gal points applied with 75% except the late sugar which I added at 3.2 gal and DID NOT apply the 75% efficiency, then my OG should have 67.5, rounded up to 68. With the above mentioned Boil Size and Evaporation Rate box selected, BF calculates an OG of 1.070. Pretty darn close and likely acceptable in rounding differences. Most importantly, my measured OG was 1.067!
So, although most of my recipes have somehow been coming out nearly spot on for the last couple years, it seems I need to change my selection to use Boil Size and Boil Evaporation Rate to get the most accurate numbers. At least until I redesign my system/process to improve my post-boil losses. It would seem the closer that gets to zero, the less impact the selection would have.
@RPIScotty - Thanks for all your input and continuing on this thread as I worked this out.
@Spyderbyte07 - You first clued me in to the late sugar points not being correct which eventually got me to my destination.
@CascadesBrewer - You thought that the recipe was calculating the late sugar addition at 2.5 gal volume which includes my post-boil losses...well, you were right and then some!
@Yooper - This (at least partly) addresses our email discussion.