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Beer bottles to store sterile starter wort?

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I don't think that doing something at home or in an industrial plant makes any difference. If you can replicate the same parameters in a home environment then you're good to go. If you can't than you're taking a risk, regardless of whether you're doing this at home or in an industrial plant.
 
I haven't dumped them yet because my wife hasn't gone anywhere; we're in the middle of a blizzard so we both stayed home. But I noticed that the 12 oz bottles all still look okay, the ones that were moldy were the 500mls, so I think I might use one or two of the 12-ozers so this isn't a total loss. I want to culture the yeast from a can or two of Lagunitas Hazy Wonder to use to brew a porter. I will boil it first.
 

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