Does sediment/particulat matter in the primary/secondary skew the specific gravity? AKA if the beer obviously hasn't settled out yet does and still looks like there is a lot of junk in there does it increase the specific gravity?
What's going on? Rather than throwing out possible "reasons" why something is happening, why don't you tell us exactly the situation, and we'll tell you the reasons why.
Let me guess, this is your first batch of beer, it's an extract batch, you topped off with water and your gravity is way off from what your recipe should be, am I close?
A lot of times new brewers on here post their "theories" as too what's wrong, but they don't actually tell us their situation or anything that could really help us to help them.
Nope, only things which are dissolved completely can affect your gravity- mainly sugars and alcohol.
I have used bottle harvested hoegaarden yeast that had had a krausen on it for upwards of 3 weeks, where even the gravity reading showed that the beer was finished.
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If your hydro readings do show that your beer is finished, carefully racking the beer to your bottling bucket, and letting the krausen float down to the trub is usually all you need to do, it won't transfer across, instead it usually will just get stuck in the trub. Heck half the time just lifting the bucket up to your table to rack will knock the krausen loose.
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