I like the term "yeast ranching!" I have a herd (jar) of 1056, a couple herds of Pacman, one herd of 1010, and several herds of WLP568 (Saison blend). Each of which has millions of heads in it!
I use the yeast washing method from the link above. I typically do it from primary. Sometimes I'm not as patient so I get a little bit of trub in the mix but that doesn't seem to hurt anything. I've used yeast that's been in the fridge in a mason jar for over a year with success (Irish Ale yeast).
As for pouring off a bit from a fermented starter, there shouldn't be any issue as long as it's fully fermented. If it hasn't completely fermented, you may be building up some pressure in your mason jar. I actually had some wort mixed in one of my Pacman yeast jars. When I opened it after ~ 6 months, it was carbonated. The yeast had settled to the bottom, but the liquid was fizzy. The yeast were fine though.