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How much yeast should you pick up when bottling?

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GLWIII

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I brewed a somewhat large stout (1.092/1.022) which, after seven weeks in the bottle, is making very slow progress towards carbonation. Normally, I try to keep as much of the trub out of the bottling bucket as possible, but I may have been a bit too efficient here. That said, a couple of questions:

With these bigger brews is it best to stir up a little trub when racking to the bottling bucket to assure s healthy amount of yeast gets to the bottle, or is it generally accepted that there should be enough yeast in suspension to get the job done?

In my case, I have been shaking the bottles about once a week and storing in a warm place to aid keep things going. I notice in my bottles I have very little sediment on the bottoms of the bottle. Does there come a point where that practice is useless or will the yeast continue their work as long as I keep shaking away.
 
Some beers just take longer than other and this seems particularly true for big stouts.

I leave the yeast cake undisturbed when racking. Yeast is microscopic and there are a gazillion in suspension even in crystal clear beer. My beers carbonate just fine and I have only a light dusting of yeast on the bottom of the bottle.
 
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