My 6 1/2 gallon carboys are wider than my 6 gallon carboys. I discovered that when I bought two 6 1/2 gallon carboys on a whim, and found when I got home that they wouldn't fit in the fermenter that I had planned to use. I found an alternative fermenting chamber, however.
After primary fermentation, I use two 6 gallon carboys for secondary fermentation, and rack to two 5 gallon kegs for priming and conditioning. I transfer the beer using CO2 and the system is always closed. I find that the use of blow-off tubes leads to cleaner beers.
I like how the loss of beer due to blow-off, trub, and evaporation is made up by the extra 1 gallon capacity of the 6 1/2 gallon carboys. That said, you can do the same thing with 6 gallon carboys, and if cost is an issue, there's no reason not to. Get a brew hauler for each carboy; it makes moving them around easier and less dangerous.