Go ahead and prime it, since you are planning on waiting (good policy that). For most ales, 2-4 months out would be best for flavor. More, if you keep it cold.
When I keg, I put a little CO2 on the keg to be certain the lid is seated. Whether or not I prime depends. If it was a kit & there's priming sugar, I toss it in. If not, I force carbonate when I put it on tap. Typically, I age ales for 4 months, but as you can see in my sig, some of them are much older.
If you decide to prime, burp the keg before connecting to the CO2. It won't hurt the carbonation, but it will prevent backflow into the regulator.