I thought about maybe inoculating one with the starter and inoculating the other with the yeast out of the kegs. I would hate to find out that it ruined one of them but, at least I'd have the other to drink and I know if the starter was bad or not, for sure. I like to hear what you say and I'd like to not be worried about it but, when I taste that sour taste, it makes me think that the whole batch is going to go bad if I put it in there.
It's just beer. Do your experiment, do what you like, report back here.