A couple of possibilities.
It could be CO2 coming out of solution. The cloth may just provide the surface to get the CO2 to come out of solution. This WILL NOT harm your beer.
If you are using an autosiphon, it could be air leaking in from around the base of the piston seal. This would be AIR and IS NOT good. I may lead to early staling of the beer (if it lasts that long) The filter is slowing the flow and creating extra pressure drop which allows some air to sneak past the seal.
One solution to this is to put the autosiphon in the beer and let it set for a minute, and some beer will flow past the seal and be on "top" of the piston and help prevent air getting in (you suck up that "leaked " beer instead).
The next solution, which works for any siphon and bubbling issues. DON'T SIPHON SO FAST (smaller height difference). The slower you siphon, the smaller the pressure drop and the less likely you are to get air sucked in or CO2 to come out of solution.