No it wouldn't be a problem at all.
Before racking into the keg, make sure it's been purged with CO2 (eg, pressurize it, burp it a bit, pressurize it again, then depressurize and remove the lid carefully to leave a blanket of CO2 in the keg) and then rack "under" the CO2 blanket.
When you're done, put the lid on and pressurize/burp again as usual, then chill/set/forget.
You'll use a little more CO2 on the front side to take up the space you're not using, but it's the same either way.