I just toss 'em. Unlike the bottles from Stone, you can't get the paint off the Rogue bottles, so they are useless to save for bottling unless you don't mind the Rogue paint job.
(Dilute Muriatic acid will get the paint off of the Stone bottles, but even concentrated acid won't affect the Rogue bottles.)
Reality is a crutch for people who can't cope with drugs. -Lily Tomlin