I think your beer will be ok. The dry hops should sink into the beer once the krausen falls away completely.
I usually give the beer a full 2 or 3 weeks in the primary before racking to a secondary, then add dry hops in the secondary. I'll let the hops sit in the beer for a week or so then bottle.
Primary/Secondary: #132 American Wheat
Kegged: #130 American Pale Ale, #131 Stone IPA clone
Planned: Dusseldorf Alt, West Coast IPA