secondary fermenation is an incorrect term. no fermentation should occur after primary. its just a clearing tank or a 'bright tank'
you can strain the hops if you like. it really doesn't hurt if some get into the primary.
Primary: English Mild
On tap: Pale Ale, Lancelot's Wheat, English Brown Ale, Steam Beer, HoovNuts IPA
Bottled: MOAM, Braggot, Raspberry Melomel, Merlot, Apfelwein, Pyment, Sweet mead, Cabernet
Gal in 2009: 27, Gal in 2010: 34, Gal in 2011: 13, Gal in 2012: 10