Yeah, I wouldn't worry about it until it is carbed, conditioned, cleared, and cold. The color will be homogenous by the time the beer is done.
I would be ESTATIC to get a rusty red color in an Amber or Scottish Ale!
Primary #1 - Midnight Ryeder (Midnight Wheat and Rye)
Primary #2 - Florida Weiss
Primary #3 - Kane-DOH APA (Honey Citra APA)
Secondary #1 - Downtown Flanders Brown (brewed August 2012)
Keg #1 - Raspberry Florida Weiss
Keg #2 - Cinnamon Raisin Cider
Keg #3 - NONE!
Bottled - NONE!