Haven't done a large enough batch to try that (kettle is a bit on the small side), but I don't see any reason that wouldn't work. As long as the wort you separate is exactly 50/50 between both fermenters, I don't see a problem.
Bottled/Fridge: Sierra Nevada Celebration
Bombers/Growlers/Aging: The Abyss, Firestone 19th Anniversary Ale
Coming Up: something spiffy, most likely