The reason certain recipes call for this is that the LME you are referring to has already been boiled and condensed. By boiling all of the LME again for 60 minutes you are in fact "cooking" it twice, which will deepen the color and affect the potential flavor of your finished beer. This typically is not much of a concern in darker beers, but lighter beers are hard to get the color right with LME. From my experience I don't have that issue near as much with DME, although it does turn out slightly darker than if it was an all grain version using the same base malt. I'm sure you might see lots of preferences for people just adding all at once in the beginning and for those that add 1/2 at the beginning and 1/2 at the end (also known as the "Texas Two Step"). Try it both ways with the same recipe and see what you prefer best. Cheers!