Some of my favorites are (all in the pubs list of above link):
Arbor Brewing (the mother ship for the corner brewery in ypsi)
Ashley's (amazing quantity of brews on tap)
Conor O'Neill's (Irish Pub)
Grizzly Peak Brewing
and there is a new one I don't see in the list and haven't tried it yet, but is a another brewery Blue Tractor Cook Shop - An Old School Establishment