You CAN use the 5 gallon carboy for the whole fermentation, but you might lose some beer! Your carboy will be up to the very tippy top because of the volume. Then comes the krausen. Even with a blow off, you'll be losing some off the top. You'll also have a couple inches of trub, which takes up space. I usually end up with 5.25 gallons of "stuff" in my primary, and just about 5 gallons when I rack to secondary. My last brew was done on a yeast cake, and I ended up with 4.5 gallons to bottle, even though there was just over 5 gallons in primary. My second beer was 5 gallons and even in a 7.5 gallon bucket with a blow off, I lost some because of the violent fermentation.
I'd recommend a 6.5 gallon carboy for primary, or a regular brew bucket. You need the extra space.
Lorena
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Broken Leg Brewery
Giving beer a leg to stand on since 2006
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