Alright so here is the response from Midwest:
"The main difference is that we get the non-Brew Logic setup from our draft supplier, while we were able to source our own parts from a manufacturer on the BrewLogic setup. We assemble the BrewLogic systems here, so they are our configuration. We are able to pass cost savings onto you. Functionally, they work the same, but the parts are made by different manufacturers."
So there you go...
I think this maybe the setup I go with for my initial kegging setup.