They don't give species names, so it's a bit tough to make generalizations without expert-level knowledge of those genera, but at least in the case of
Megasphaera it looks like a stretch.
Megasphaera elsdenii is a
standard component of mammal gut flora. Like nearly anything else, it
can be pathogenic, but it's really rare. You might consider boiling your beer before injecting it, but if you're limiting yourself to oral consumption it doesn't sound very concerning.
I didn't look into
Pectinatus, but I'm sure google scholar would turn up details fairly quickly. I'd be surprised if it turned out to be any different, though.