I brewed up the 115th Dream Hopbursted IPA from NB a few weeks ago. I also have the therminator and it still worked like a dream. I use a 15gal megapot along with the hopstopper (http://www.theelectricbrewery.com/hop-stopper). I had absolutely no issues whatsoever, even after using a pound of pellet hops. Once done with the therminator, I cycle PBW through it using my steelhead pump, it works perfectly.
What is the mesh size of that hop stopper?
Judging from the pictures it seems relatively coarse, like a 30x30 mesh perhaps (30 wires per inch). That would make a 500 micron filter, roughly, depending on wire thickness. Yet it seems to hold a lot of sludge back. How much does go through? I'm trying to eliminate as much hop sludge being transferred to the fermentor as possible, and at the same time keep my plate chiller clean too. I spend more time cleaning the chiller than anything else from brewday.
The hop baskets from Stainless Brewing are 400 micron, Chad's are 300 micron with a 400 micron option. Most people seem to prefer the 300 micron for tighter filtering.